species:   Bodot
pid:       PID1114
parent:    Bd-milR6
paralog:   a
locus:     SACU01000001.1:3086995-3087154
matures:   ['UUUCGGGACUUCGUACUGACC', 'GUCAGUGAAGCCCCAAAUA']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram SACU01000001.1:3086995-3087154

0 out of bounds
58 alignments
53 proper strand
35 stranded perfect matches

                                                                                                      *********************    ***********************          
UCCCGGUGAAGGCGCCGCCGACGGUUACGAGGGUUACCUGACCAACCGCACCAUCACCGGCCUCUUCGGCCAAGCCAUCCAAGGCGCUGUCGUCAUGCUCGAGCGUCAGUGAAGCCCCAAAUAAACAACUUUCGGGACUUCGUACUGACCUUUUCCCCCA
..(((((((.((.((.......((((...(((....)))....)))))).)).)))))))......((((...(((......)))...))))........(((.(((((((((((((.(((........))).))).))))..)))))))))........
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUGACC---------- l=21 a=22 c
--------------------------------------------------------------------------------------------------------GUCAGUGAAGCCCCAAAUA------------------------------------- l=19 a=0 c*
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUGACC---------- l=21 a=22 ma
--------------------------------------------------------------------------------------------------------GUCAGUGAAGCCCCAAAUA------------------------------------- l=19 a=0 ma*

------------------------------------------------------------------------------------------------------------------------------------------UUCGUACUGACCUUUUCCCC-- l=20 a=1 
------------------------------------------------------------------------------------------------------------------------------------------UUCGUACUGACCUUUUCCCCC- l=21 a=4 
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUG------------- l=18 a=1 
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUGA------------ l=19 a=2 
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUGAC----------- l=20 a=2 
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUGACu---------- l=21 a=6 
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUGACC---------- l=21 a=22 (c,ma)
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGACUUCGUACUGACa---------- l=21 a=8 
---------------------------------------------------------------------------------------------------------------------------------UUUCGGGAuUUCGUACUGACC---------- l=21 a=2 
-------------------------------------------------------------------------------------------------------------------------------ACUUUCGGGACUUCGUACUa------------- l=20 a=1 
------------------------------------------------------------------------------------------------------------------------------AACUUUCGGGACUUCGUACUG------------- l=21 a=2 
------------------------------------------------------------------------------------------------------------------------------AACUUUCGGGACUUCGUACUGACu---------- l=24 a=1 
------------------------------------------------------------------------------CCAAGGCGCUGUCGUCAUGCUCGAGC-------------------------------------------------------- l=26 a=1 

mb-01111
ax-1011011
ku-01
ss-111111111100
fn-111
